Update doxygen stuff for new waf (and new doxygen).

Bump version to 0.6.4.
Update ChangeLog.


git-svn-id: http://svn.drobilla.net/lad/trunk/slv2@1954 a436a847-0d15-0410-975c-d299462d15a1

1 files changed, 337 insertions, 84 deletions

diff --git a/doc/reference.doxygen.in b/doc/reference.doxygen.in
index 781d4bc..37bdd35 100644
--- a/doc/reference.doxygen.in
+++ b/doc/reference.doxygen.in
@@ -1,4 +1,4 @@
-# Doxyfile 1.5.2
+# Doxyfile 1.5.8
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project
@@ -14,11 +14,11 @@
 # Project related configuration options
 #---------------------------------------------------------------------------
 
-# This tag specifies the encoding used for all characters in the config file that 
-# follow. The default is UTF-8 which is also the encoding used for all text before 
-# the first occurrence of this tag. Doxygen uses libiconv (or the iconv built into 
-# libc) for the transcoding. See http://www.gnu.org/software/libiconv for the list of 
-# possible encodings.
+# This tag specifies the encoding used for all characters in the config file 
+# that follow. The default is UTF-8 which is also the encoding used for all 
+# text before the first occurrence of this tag. Doxygen uses libiconv (or the 
+# iconv built into libc) for the transcoding. See 
+# http://www.gnu.org/software/libiconv for the list of possible encodings.
 
 DOXYFILE_ENCODING      = UTF-8
 
@@ -54,10 +54,11 @@ CREATE_SUBDIRS         = NO
 # information to generate all constant output in the proper language. 
 # The default language is English, other supported languages are: 
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional, 
-# Croatian, Czech, Danish, Dutch, Finnish, French, German, Greek, Hungarian, 
-# Italian, Japanese, Japanese-en (Japanese with English messages), Korean, 
-# Korean-en, Lithuanian, Norwegian, Polish, Portuguese, Romanian, Russian, 
-# Serbian, Slovak, Slovene, Spanish, Swedish, and Ukrainian.
+# Croatian, Czech, Danish, Dutch, Farsi, Finnish, French, German, Greek, 
+# Hungarian, Italian, Japanese, Japanese-en (Japanese with English messages), 
+# Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian, Polish, 
+# Portuguese, Romanian, Russian, Serbian, Serbian-Cyrilic, Slovak, Slovene, 
+# Spanish, Swedish, and Ukrainian.
 
 OUTPUT_LANGUAGE        = English
 
@@ -133,11 +134,19 @@ SHORT_NAMES            = NO
 # If the JAVADOC_AUTOBRIEF tag is set to YES then Doxygen 
 # will interpret the first line (until the first dot) of a JavaDoc-style 
 # comment as the brief description. If set to NO, the JavaDoc 
-# comments will behave just like the Qt-style comments (thus requiring an 
-# explicit @brief command for a brief description.
+# comments will behave just like regular Qt-style comments 
+# (thus requiring an explicit @brief command for a brief description.)
 
 JAVADOC_AUTOBRIEF      = YES
 
+# If the QT_AUTOBRIEF tag is set to YES then Doxygen will 
+# interpret the first line (until the first dot) of a Qt-style 
+# comment as the brief description. If set to NO, the comments 
+# will behave just like regular Qt-style comments (thus requiring 
+# an explicit \brief command for a brief description.)
+
+QT_AUTOBRIEF           = NO
+
 # The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make Doxygen 
 # treat a multi-line C++ special comment block (i.e. a block of //! or /// 
 # comments) as a brief description. This used to be the default behaviour. 
@@ -146,13 +155,6 @@ JAVADOC_AUTOBRIEF      = YES
 
 MULTILINE_CPP_IS_BRIEF = NO
 
-# If the DETAILS_AT_TOP tag is set to YES then Doxygen 
-# will output the detailed description near the top, like JavaDoc.
-# If set to NO, the detailed description appears after the member 
-# documentation.
-
-DETAILS_AT_TOP         = NO
-
 # If the INHERIT_DOCS tag is set to YES (the default) then an undocumented 
 # member inherits the documentation from any documented member that it 
 # re-implements.
@@ -187,14 +189,37 @@ ALIASES                =
 OPTIMIZE_OUTPUT_FOR_C  = YES
 
 # Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java 
-# sources only. Doxygen will then generate output that is more tailored for Java. 
-# For instance, namespaces will be presented as packages, qualified scopes 
-# will look different, etc.
+# sources only. Doxygen will then generate output that is more tailored for 
+# Java. For instance, namespaces will be presented as packages, qualified 
+# scopes will look different, etc.
 
 OPTIMIZE_OUTPUT_JAVA   = NO
 
-# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want to 
-# include (a tag file for) the STL sources as input, then you should 
+# Set the OPTIMIZE_FOR_FORTRAN tag to YES if your project consists of Fortran 
+# sources only. Doxygen will then generate output that is more tailored for 
+# Fortran.
+
+OPTIMIZE_FOR_FORTRAN   = NO
+
+# Set the OPTIMIZE_OUTPUT_VHDL tag to YES if your project consists of VHDL 
+# sources. Doxygen will then generate output that is tailored for 
+# VHDL.
+
+OPTIMIZE_OUTPUT_VHDL   = NO
+
+# Doxygen selects the parser to use depending on the extension of the files it parses. 
+# With this tag you can assign which parser to use for a given extension. 
+# Doxygen has a built-in mapping, but you can override or extend it using this tag. 
+# The format is ext=language, where ext is a file extension, and language is one of 
+# the parsers supported by doxygen: IDL, Java, Javascript, C#, C, C++, D, PHP, 
+# Objective-C, Python, Fortran, VHDL, C, C++. For instance to make doxygen treat 
+# .inc files as Fortran files (default is PHP), and .f files as C (default is Fortran), 
+# use: inc=Fortran f=C
+
+EXTENSION_MAPPING      = 
+
+# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want 
+# to include (a tag file for) the STL sources as input, then you should 
 # set this tag to YES in order to let doxygen match functions declarations and 
 # definitions whose arguments contain STL classes (e.g. func(std::string); v.s. 
 # func(std::string) {}). This also make the inheritance and collaboration 
@@ -202,11 +227,26 @@ OPTIMIZE_OUTPUT_JAVA   = NO
 
 BUILTIN_STL_SUPPORT    = NO
 
-# If you use Microsoft's C++/CLI language, you should set this option to YES to
+# If you use Microsoft's C++/CLI language, you should set this option to YES to 
 # enable parsing support.
 
 CPP_CLI_SUPPORT        = NO
 
+# Set the SIP_SUPPORT tag to YES if your project consists of sip sources only. 
+# Doxygen will parse them like normal C++ but will assume all classes use public 
+# instead of private inheritance when no explicit protection keyword is present.
+
+SIP_SUPPORT            = NO
+
+# For Microsoft's IDL there are propget and propput attributes to indicate getter 
+# and setter methods for a property. Setting this option to YES (the default) 
+# will make doxygen to replace the get and set methods by a property in the 
+# documentation. This will only work if the methods are indeed getting or 
+# setting a simple type. If this is not the case, or you want to show the 
+# methods anyway, you should set this option to NO.
+
+IDL_PROPERTY_SUPPORT   = YES
+
 # If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC 
 # tag is set to YES, then doxygen will reuse the documentation of the first 
 # member in the group (if any) for the other members of the group. By default 
@@ -222,6 +262,32 @@ DISTRIBUTE_GROUP_DOC   = NO
 
 SUBGROUPING            = YES
 
+# When TYPEDEF_HIDES_STRUCT is enabled, a typedef of a struct, union, or enum 
+# is documented as struct, union, or enum with the name of the typedef. So 
+# typedef struct TypeS {} TypeT, will appear in the documentation as a struct 
+# with name TypeT. When disabled the typedef will appear as a member of a file, 
+# namespace, or class. And the struct will be named TypeS. This can typically 
+# be useful for C code in case the coding convention dictates that all compound 
+# types are typedef'ed and only the typedef is referenced, never the tag name.
+
+TYPEDEF_HIDES_STRUCT   = NO
+
+# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to 
+# determine which symbols to keep in memory and which to flush to disk. 
+# When the cache is full, less often used symbols will be written to disk. 
+# For small to medium size projects (<1000 input files) the default value is 
+# probably good enough. For larger projects a too small cache size can cause 
+# doxygen to be busy swapping symbols to and from disk most of the time 
+# causing a significant performance penality. 
+# If the system has enough physical memory increasing the cache will improve the 
+# performance by keeping more symbols in memory. Note that the value works on 
+# a logarithmic scale so increasing the size by one will rougly double the 
+# memory usage. The cache size is given by this formula: 
+# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0, 
+# corresponding to a cache size of 2^16 = 65536 symbols
+
+SYMBOL_CACHE_SIZE      = 0
+
 #---------------------------------------------------------------------------
 # Build related configuration options
 #---------------------------------------------------------------------------
@@ -256,6 +322,14 @@ EXTRACT_LOCAL_CLASSES  = NO
 
 EXTRACT_LOCAL_METHODS  = NO
 
+# If this flag is set to YES, the members of anonymous namespaces will be 
+# extracted and appear in the documentation as a namespace called 
+# 'anonymous_namespace{file}', where file will be replaced with the base 
+# name of the file that contains the anonymous namespace. By default 
+# anonymous namespace are hidden.
+
+EXTRACT_ANON_NSPACES   = NO
+
 # If the HIDE_UNDOC_MEMBERS tag is set to YES, Doxygen will hide all 
 # undocumented members of documented classes, files or namespaces. 
 # If set to NO (the default) these members will be included in the 
@@ -331,11 +405,17 @@ SORT_MEMBER_DOCS       = NO
 
 SORT_BRIEF_DOCS        = NO
 
+# If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the 
+# hierarchy of group names into alphabetical order. If set to NO (the default) 
+# the group names will appear in their defined order.
+
+SORT_GROUP_NAMES       = NO
+
 # If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be 
 # sorted by fully-qualified names, including namespaces. If set to 
 # NO (the default), the class list will be sorted only by class name, 
 # not including the namespace part. 
-# Note: This option is not very useful if HIDE_SCOPE_NAMES is set to YES.
+# Note: This option is not very useful if HIDE_SCOPE_NAMES is set to YES. 
 # Note: This option applies only to the class list, not to the 
 # alphabetical list.
 
@@ -392,9 +472,22 @@ SHOW_USED_FILES        = YES
 
 SHOW_DIRECTORIES       = NO
 
+# Set the SHOW_FILES tag to NO to disable the generation of the Files page. 
+# This will remove the Files entry from the Quick Index and from the 
+# Folder Tree View (if specified). The default is YES.
+
+SHOW_FILES             = YES
+
+# Set the SHOW_NAMESPACES tag to NO to disable the generation of the 
+# Namespaces page. 
+# This will remove the Namespaces entry from the Quick Index 
+# and from the Folder Tree View (if specified). The default is YES.
+
+SHOW_NAMESPACES        = YES
+
 # The FILE_VERSION_FILTER tag can be used to specify a program or script that 
-# doxygen should invoke to get the current version for each file (typically from the 
-# version control system). Doxygen will invoke the program by executing (via 
+# doxygen should invoke to get the current version for each file (typically from 
+# the version control system). Doxygen will invoke the program by executing (via 
 # popen()) the command <command> <input-file>, where <command> is the value of 
 # the FILE_VERSION_FILTER tag, and <input-file> is the name of an input file 
 # provided by doxygen. Whatever the program writes to standard output 
@@ -402,6 +495,15 @@ SHOW_DIRECTORIES       = NO
 
 FILE_VERSION_FILTER    = 
 
+# The LAYOUT_FILE tag can be used to specify a layout file which will be parsed by 
+# doxygen. The layout file controls the global structure of the generated output files 
+# in an output format independent way. The create the layout file that represents 
+# doxygen's defaults, run doxygen with the -l option. You can optionally specify a 
+# file name after the option, if omitted DoxygenLayout.xml will be used as the name 
+# of the layout file.
+
+LAYOUT_FILE            = 
+
 #---------------------------------------------------------------------------
 # configuration options related to warning and progress messages
 #---------------------------------------------------------------------------
@@ -463,25 +565,26 @@ WARN_LOGFILE           =
 # with spaces.
 
 INPUT                  = @SLV2_SRCDIR@/doc/mainpage.dox \
+                         @SLV2_SRCDIR@/slv2/collections.h \
                          @SLV2_SRCDIR@/slv2/plugin.h \
                          @SLV2_SRCDIR@/slv2/pluginclass.h \
-                         @SLV2_SRCDIR@/slv2/pluginclasses.h \
                          @SLV2_SRCDIR@/slv2/plugininstance.h \
-                         @SLV2_SRCDIR@/slv2/plugins.h \
                          @SLV2_SRCDIR@/slv2/pluginui.h \
                          @SLV2_SRCDIR@/slv2/pluginuiinstance.h \
-                         @SLV2_SRCDIR@/slv2/pluginuis.h \
                          @SLV2_SRCDIR@/slv2/port.h \
+                         @SLV2_SRCDIR@/slv2/query.h \
+                         @SLV2_SRCDIR@/slv2/scalepoint.h \
+                         @SLV2_SRCDIR@/slv2/slv2.h \
                          @SLV2_SRCDIR@/slv2/types.h \
                          @SLV2_SRCDIR@/slv2/util.h \
                          @SLV2_SRCDIR@/slv2/value.h \
-                         @SLV2_SRCDIR@/slv2/values.h \
                          @SLV2_SRCDIR@/slv2/world.h
 
-# This tag can be used to specify the character encoding of the source files that 
-# doxygen parses. Internally doxygen uses the UTF-8 encoding, which is also the default 
-# input encoding. Doxygen uses libiconv (or the iconv built into libc) for the transcoding. 
-# See http://www.gnu.org/software/libiconv for the list of possible encodings.
+# This tag can be used to specify the character encoding of the source files 
+# that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is 
+# also the default input encoding. Doxygen uses libiconv (or the iconv built 
+# into libc) for the transcoding. See http://www.gnu.org/software/libiconv for 
+# the list of possible encodings.
 
 INPUT_ENCODING         = UTF-8
 
@@ -490,7 +593,7 @@ INPUT_ENCODING         = UTF-8
 # and *.h) to filter out the source-files in the directories. If left 
 # blank the following patterns are tested: 
 # *.c *.cc *.cxx *.cpp *.c++ *.java *.ii *.ixx *.ipp *.i++ *.inl *.h *.hh *.hxx 
-# *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.mm *.py
+# *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.mm *.py *.f90
 
 FILE_PATTERNS          = 
 
@@ -521,9 +624,10 @@ EXCLUDE_SYMLINKS       = NO
 EXCLUDE_PATTERNS       = 
 
 # The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names 
-# (namespaces, classes, functions, etc.) that should be excluded from the output. 
-# The symbol name can be a fully qualified name, a word, or if the wildcard * is used, 
-# a substring. Examples: ANamespace, AClass, AClass::ANamespace, ANamespace::*Test
+# (namespaces, classes, functions, etc.) that should be excluded from the 
+# output. The symbol name can be a fully qualified name, a word, or if the 
+# wildcard * is used, a substring. Examples: ANamespace, AClass, 
+# AClass::ANamespace, ANamespace::*Test
 
 EXCLUDE_SYMBOLS        = 
 
@@ -558,14 +662,17 @@ IMAGE_PATH             =
 # by executing (via popen()) the command <filter> <input-file>, where <filter> 
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an 
 # input file. Doxygen will then use the output that the filter program writes 
-# to standard output.  If FILTER_PATTERNS is specified, this tag will be 
+# to standard output. 
+# If FILTER_PATTERNS is specified, this tag will be 
 # ignored.
 
 INPUT_FILTER           = 
 
 # The FILTER_PATTERNS tag can be used to specify filters on a per file pattern 
-# basis.  Doxygen will compare the file name with each pattern and apply the 
-# filter if there is a match.  The filters are a list of the form: 
+# basis. 
+# Doxygen will compare the file name with each pattern and apply the 
+# filter if there is a match. 
+# The filters are a list of the form: 
 # pattern=filter (like *.cpp=my_cpp_filter). See INPUT_FILTER for further 
 # info on how filters are used. If FILTER_PATTERNS is empty, INPUT_FILTER 
 # is applied to all files.
@@ -600,22 +707,23 @@ INLINE_SOURCES         = NO
 
 STRIP_CODE_COMMENTS    = YES
 
-# If the REFERENCED_BY_RELATION tag is set to YES (the default) 
+# If the REFERENCED_BY_RELATION tag is set to YES 
 # then for each documented function all documented 
 # functions referencing it will be listed.
 
 REFERENCED_BY_RELATION = YES
 
-# If the REFERENCES_RELATION tag is set to YES (the default) 
+# If the REFERENCES_RELATION tag is set to YES 
 # then for each documented function all documented entities 
 # called/used by that function will be listed.
 
 REFERENCES_RELATION    = YES
 
-# If the REFERENCES_LINK_SOURCE tag is set to YES (the default)
-# and SOURCE_BROWSER tag is set to YES, then the hyperlinks from
-# functions in REFERENCES_RELATION and REFERENCED_BY_RELATION lists will
-# link to the source code.  Otherwise they will link to the documentstion.
+# If the REFERENCES_LINK_SOURCE tag is set to YES (the default) 
+# and SOURCE_BROWSER tag is set to YES, then the hyperlinks from 
+# functions in REFERENCES_RELATION and REFERENCED_BY_RELATION lists will 
+# link to the source code. 
+# Otherwise they will link to the documentation.
 
 REFERENCES_LINK_SOURCE = YES
 
@@ -704,9 +812,43 @@ HTML_STYLESHEET        =
 
 HTML_ALIGN_MEMBERS     = YES
 
+# If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML 
+# documentation will contain sections that can be hidden and shown after the 
+# page has loaded. For this to work a browser that supports 
+# JavaScript and DHTML is required (for instance Mozilla 1.0+, Firefox 
+# Netscape 6.0+, Internet explorer 5.0+, Konqueror, or Safari).
+
+HTML_DYNAMIC_SECTIONS  = NO
+
+# If the GENERATE_DOCSET tag is set to YES, additional index files 
+# will be generated that can be used as input for Apple's Xcode 3 
+# integrated development environment, introduced with OSX 10.5 (Leopard). 
+# To create a documentation set, doxygen will generate a Makefile in the 
+# HTML output directory. Running make will produce the docset in that 
+# directory and running "make install" will install the docset in 
+# ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find 
+# it at startup. 
+# See http://developer.apple.com/tools/creatingdocsetswithdoxygen.html for more information.
+
+GENERATE_DOCSET        = NO
+
+# When GENERATE_DOCSET tag is set to YES, this tag determines the name of the 
+# feed. A documentation feed provides an umbrella under which multiple 
+# documentation sets from a single provider (such as a company or product suite) 
+# can be grouped.
+
+DOCSET_FEEDNAME        = "Doxygen generated docs"
+
+# When GENERATE_DOCSET tag is set to YES, this tag specifies a string that 
+# should uniquely identify the documentation set bundle. This should be a 
+# reverse domain-name style string, e.g. com.mycompany.MyDocSet. Doxygen 
+# will append .docset to the name.
+
+DOCSET_BUNDLE_ID       = org.doxygen.Project
+
 # If the GENERATE_HTMLHELP tag is set to YES, additional index files 
 # will be generated that can be used as input for tools like the 
-# Microsoft HTML help workshop to generate a compressed HTML help file (.chm) 
+# Microsoft HTML help workshop to generate a compiled HTML help file (.chm) 
 # of the generated HTML documentation.
 
 GENERATE_HTMLHELP      = NO
@@ -731,6 +873,12 @@ HHC_LOCATION           =
 
 GENERATE_CHI           = NO
 
+# If the GENERATE_HTMLHELP tag is set to YES, the CHM_INDEX_ENCODING 
+# is used to encode HtmlHelp index (hhk), content (hhc) and project file 
+# content.
+
+CHM_INDEX_ENCODING     = 
+
 # If the GENERATE_HTMLHELP tag is set to YES, the BINARY_TOC flag 
 # controls whether a binary table of contents is generated (YES) or a 
 # normal table of contents (NO) in the .chm file.
@@ -742,6 +890,55 @@ BINARY_TOC             = NO
 
 TOC_EXPAND             = NO
 
+# If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and QHP_VIRTUAL_FOLDER 
+# are set, an additional index file will be generated that can be used as input for 
+# Qt's qhelpgenerator to generate a Qt Compressed Help (.qch) of the generated 
+# HTML documentation.
+
+GENERATE_QHP           = NO
+
+# If the QHG_LOCATION tag is specified, the QCH_FILE tag can 
+# be used to specify the file name of the resulting .qch file. 
+# The path specified is relative to the HTML output folder.
+
+QCH_FILE               = 
+
+# The QHP_NAMESPACE tag specifies the namespace to use when generating 
+# Qt Help Project output. For more information please see 
+# http://doc.trolltech.com/qthelpproject.html#namespace
+
+QHP_NAMESPACE          = 
+
+# The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating 
+# Qt Help Project output. For more information please see 
+# http://doc.trolltech.com/qthelpproject.html#virtual-folders
+
+QHP_VIRTUAL_FOLDER     = doc
+
+# If QHP_CUST_FILTER_NAME is set, it specifies the name of a custom filter to add. 
+# For more information please see 
+# http://doc.trolltech.com/qthelpproject.html#custom-filters
+
+QHP_CUST_FILTER_NAME   = 
+
+# The QHP_CUST_FILT_ATTRS tag specifies the list of the attributes of the custom filter to add.For more information please see 
+# <a href="http://doc.trolltech.com/qthelpproject.html#custom-filters">Qt Help Project / Custom Filters</a>.
+
+QHP_CUST_FILTER_ATTRS  = 
+
+# The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this project's 
+# filter section matches. 
+# <a href="http://doc.trolltech.com/qthelpproject.html#filter-attributes">Qt Help Project / Filter Attributes</a>.
+
+QHP_SECT_FILTER_ATTRS  = 
+
+# If the GENERATE_QHP tag is set to YES, the QHG_LOCATION tag can 
+# be used to specify the location of Qt's qhelpgenerator. 
+# If non-empty doxygen will try to run qhelpgenerator on the generated 
+# .qhp file.
+
+QHG_LOCATION           = 
+
 # The DISABLE_INDEX tag can be used to turn on/off the condensed index at 
 # top of each HTML page. The value NO (the default) enables the index and 
 # the value YES disables it.
@@ -753,12 +950,20 @@ DISABLE_INDEX          = NO
 
 ENUM_VALUES_PER_LINE   = 4
 
-# If the GENERATE_TREEVIEW tag is set to YES, a side panel will be
-# generated containing a tree-like index structure (just like the one that 
+# The GENERATE_TREEVIEW tag is used to specify whether a tree-like index 
+# structure should be generated to display hierarchical information. 
+# If the tag value is set to FRAME, a side panel will be generated 
+# containing a tree-like index structure (just like the one that 
 # is generated for HTML Help). For this to work a browser that supports 
 # JavaScript, DHTML, CSS and frames is required (for instance Mozilla 1.0+, 
 # Netscape 6.0+, Internet explorer 5.0+, or Konqueror). Windows users are 
-# probably better off using the HTML help feature.
+# probably better off using the HTML help feature. Other possible values 
+# for this tag are: HIERARCHIES, which will generate the Groups, Directories, 
+# and Class Hierarchy pages using a tree view instead of an ordered list; 
+# ALL, which combines the behavior of FRAME and HIERARCHIES; and NONE, which 
+# disables this behavior completely. For backwards compatibility with previous 
+# releases of Doxygen, the values YES and NO are equivalent to FRAME and NONE 
+# respectively.
 
 GENERATE_TREEVIEW      = NO
 
@@ -768,6 +973,14 @@ GENERATE_TREEVIEW      = NO
 
 TREEVIEW_WIDTH         = 250
 
+# Use this tag to change the font size of Latex formulas included 
+# as images in the HTML documentation. The default is 10. Note that 
+# when you change the font size after a successful doxygen run you need 
+# to manually remove any form_*.png images from the HTML output directory 
+# to force them to be regenerated.
+
+FORMULA_FONTSIZE       = 10
+
 #---------------------------------------------------------------------------
 # configuration options related to the LaTeX output
 #---------------------------------------------------------------------------
@@ -980,8 +1193,10 @@ GENERATE_PERLMOD       = NO
 PERLMOD_LATEX          = NO
 
 # If the PERLMOD_PRETTY tag is set to YES the Perl module output will be 
-# nicely formatted so it can be parsed by a human reader.  This is useful 
-# if you want to understand what is going on.  On the other hand, if this 
+# nicely formatted so it can be parsed by a human reader. 
+# This is useful 
+# if you want to understand what is going on. 
+# On the other hand, if this 
 # tag is set to NO the size of the Perl module output will be much smaller 
 # and Perl will parse it just the same.
 
@@ -1068,14 +1283,16 @@ SKIP_FUNCTION_MACROS   = YES
 # Optionally an initial location of the external documentation 
 # can be added for each tagfile. The format of a tag file without 
 # this location is as follows: 
-#   TAGFILES = file1 file2 ... 
+#  
+# TAGFILES = file1 file2 ... 
 # Adding location for the tag files is done as follows: 
-#   TAGFILES = file1=loc1 "file2 = loc2" ... 
+#  
+# TAGFILES = file1=loc1 "file2 = loc2" ... 
 # where "loc1" and "loc2" can be relative or absolute paths or 
 # URLs. If a location is present for each tag, the installdox tool 
-# does not have to be run to correct the links.
-# Note that each tag file must have a unique name
-# (where the name does NOT include the path)
+# does not have to be run to correct the links. 
+# Note that each tag file must have a unique name 
+# (where the name does NOT include the path) 
 # If a tag file is not located in the directory in which doxygen 
 # is run, you must also specify the path to the tagfile here.
 
@@ -1117,10 +1334,11 @@ PERL_PATH              = /usr/bin/perl
 CLASS_DIAGRAMS         = NO
 
 # You can define message sequence charts within doxygen comments using the \msc 
-# command. Doxygen will then run the mscgen tool (see http://www.mcternan.me.uk/mscgen/) to 
-# produce the chart and insert it in the documentation. The MSCGEN_PATH tag allows you to 
-# specify the directory where the mscgen tool resides. If left empty the tool is assumed to 
-# be found in the default search path.
+# command. Doxygen will then run the mscgen tool (see 
+# http://www.mcternan.me.uk/mscgen/) to produce the chart and insert it in the 
+# documentation. The MSCGEN_PATH tag allows you to specify the directory where 
+# the mscgen tool resides. If left empty the tool is assumed to be found in the 
+# default search path.
 
 MSCGEN_PATH            = 
 
@@ -1137,6 +1355,29 @@ HIDE_UNDOC_RELATIONS   = YES
 
 HAVE_DOT               = NO
 
+# By default doxygen will write a font called FreeSans.ttf to the output 
+# directory and reference it in all dot files that doxygen generates. This 
+# font does not include all possible unicode characters however, so when you need 
+# these (or just want a differently looking font) you can specify the font name 
+# using DOT_FONTNAME. You need need to make sure dot is able to find the font, 
+# which can be done by putting it in a standard location or by setting the 
+# DOTFONTPATH environment variable or by setting DOT_FONTPATH to the directory 
+# containing the font.
+
+DOT_FONTNAME           = FreeSans
+
+# The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs. 
+# The default size is 10pt.
+
+DOT_FONTSIZE           = 10
+
+# By default doxygen will tell dot to use the output directory to look for the 
+# FreeSans.ttf font (which doxygen will put there itself). If you specify a 
+# different font using DOT_FONTNAME you can set the path where dot 
+# can find it using this tag.
+
+DOT_FONTPATH           = 
+
 # If the CLASS_GRAPH and HAVE_DOT tags are set to YES then doxygen 
 # will generate a graph for each documented class showing the direct and 
 # indirect inheritance relations. Setting this tag to YES will force the 
@@ -1181,19 +1422,19 @@ INCLUDE_GRAPH          = NO
 
 INCLUDED_BY_GRAPH      = NO
 
-# If the CALL_GRAPH and HAVE_DOT tags are set to YES then doxygen will 
-# generate a call dependency graph for every global function or class method. 
-# Note that enabling this option will significantly increase the time of a run. 
-# So in most cases it will be better to enable call graphs for selected 
-# functions only using the \callgraph command.
+# If the CALL_GRAPH and HAVE_DOT options are set to YES then 
+# doxygen will generate a call dependency graph for every global function 
+# or class method. Note that enabling this option will significantly increase 
+# the time of a run. So in most cases it will be better to enable call graphs 
+# for selected functions only using the \callgraph command.
 
 CALL_GRAPH             = NO
 
-# If the CALLER_GRAPH and HAVE_DOT tags are set to YES then doxygen will 
-# generate a caller dependency graph for every global function or class method. 
-# Note that enabling this option will significantly increase the time of a run. 
-# So in most cases it will be better to enable caller graphs for selected 
-# functions only using the \callergraph command.
+# If the CALLER_GRAPH and HAVE_DOT tags are set to YES then 
+# doxygen will generate a caller dependency graph for every global function 
+# or class method. Note that enabling this option will significantly increase 
+# the time of a run. So in most cases it will be better to enable caller 
+# graphs for selected functions only using the \callergraph command.
 
 CALLER_GRAPH           = NO
 
@@ -1204,13 +1445,13 @@ GRAPHICAL_HIERARCHY    = NO
 
 # If the DIRECTORY_GRAPH, SHOW_DIRECTORIES and HAVE_DOT tags are set to YES 
 # then doxygen will show the dependencies a directory has on other directories 
-# in a graphical way. The dependency relations are determined by the #include
+# in a graphical way. The dependency relations are determined by the #include 
 # relations between the files in the directories.
 
 DIRECTORY_GRAPH        = YES
 
 # The DOT_IMAGE_FORMAT tag can be used to set the image format of the images 
-# generated by dot. Possible values are png, jpg, or gif
+# generated by dot. Possible values are png, jpg, or gif 
 # If left blank png will be used.
 
 DOT_IMAGE_FORMAT       = png
@@ -1226,19 +1467,31 @@ DOT_PATH               =
 
 DOTFILE_DIRS           = 
 
-# The MAX_DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of 
+# The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of 
 # nodes that will be shown in the graph. If the number of nodes in a graph 
 # becomes larger than this value, doxygen will truncate the graph, which is 
-# visualized by representing a node as a red box. Note that doxygen will always 
-# show the root nodes and its direct children regardless of this setting.
+# visualized by representing a node as a red box. Note that doxygen if the 
+# number of direct children of the root node in a graph is already larger than 
+# DOT_GRAPH_MAX_NODES then the graph will not be shown at all. Also note 
+# that the size of a graph can be further restricted by MAX_DOT_GRAPH_DEPTH.
 
 DOT_GRAPH_MAX_NODES    = 50
 
+# The MAX_DOT_GRAPH_DEPTH tag can be used to set the maximum depth of the 
+# graphs generated by dot. A depth value of 3 means that only nodes reachable 
+# from the root by following a path via at most 3 edges will be shown. Nodes 
+# that lay further from the root node will be omitted. Note that setting this 
+# option to 1 or 2 may greatly reduce the computation time needed for large 
+# code bases. Also note that the size of a graph can be further restricted by 
+# DOT_GRAPH_MAX_NODES. Using a depth of 0 means no depth restriction.
+
+MAX_DOT_GRAPH_DEPTH    = 0
+
 # Set the DOT_TRANSPARENT tag to YES to generate images with a transparent 
-# background. This is disabled by default, which results in a white background. 
-# Warning: Depending on the platform used, enabling this option may lead to 
-# badly anti-aliased labels on the edges of a graph (i.e. they become hard to 
-# read).
+# background. This is disabled by default, because dot on Windows does not 
+# seem to support this out of the box. Warning: Depending on the platform used, 
+# enabling this option may lead to badly anti-aliased labels on the edges of 
+# a graph (i.e. they become hard to read).
 
 DOT_TRANSPARENT        = NO
 
@@ -1262,7 +1515,7 @@ GENERATE_LEGEND        = NO
 DOT_CLEANUP            = YES
 
 #---------------------------------------------------------------------------
-# Configuration::additions related to the search engine   
+# Options related to the search engine
 #---------------------------------------------------------------------------
 
 # The SEARCHENGINE tag specifies whether or not a search engine should be