Squashed 'waflib/' changes from 915dcb17..e7a29b6b

e7a29b6b Upgrade to waf 2.0.15
8280f9de Add command for running executables from the build directory
8073c1ad Make make_simple_dox() safe in case of exception
70d03b82 Avoid use of global counter hacks for configuration display
b7d689a4 Rewrite test framework
94deadf0 Automatically add options and move add_flags() to options context
f4259ee4 Reduce system include path noise
927b6082 Automatically display configuration header
c44b8f3b Set line justification from a constant in the wscript
a48e26fd Automatically detect if wscript has a test hook
ef66724d Save runtime variables in the environment
63bcbcd3 Clean up TestContext
b1d95050 Add ExecutionContext for setting runtime environment
387c1dfa Add show_diff() and test_file_equals() utilities
29d4d293 Fix in-tree library paths
9fde01f4 Add custom configuration context
6d3612fd Add lib_path_name constant

git-subtree-dir: waflib
git-subtree-split: e7a29b6b9b2f842314244c23c14d8f8f560904e1

20 files changed, 585 insertions, 343 deletions

diff --git a/extras/autowaf.py b/extras/autowaf.py
index 92d0e57e..51077d18 100644
--- a/extras/autowaf.py
+++ b/extras/autowaf.py
@@ -4,40 +4,46 @@ import subprocess
 import sys
 import time
 
-from waflib import Build, Context, Logs, Options, Utils
+from waflib import Configure, ConfigSet, Build, Context, Logs, Options, Utils
 from waflib.TaskGen import feature, before, after
 
 global g_is_child
 g_is_child = False
 
-# Only run autowaf hooks once (even if sub projects call several times)
-global g_step
-g_step = 0
+NONEMPTY = -10
 
-global line_just
-line_just = 40
+if sys.platform == 'win32':
+    lib_path_name = 'PATH'
+elif sys.platform == 'darwin':
+    lib_path_name = 'DYLD_LIBRARY_PATH'
+else:
+    lib_path_name = 'LD_LIBRARY_PATH'
 
 # Compute dependencies globally
 # import preproc
 # preproc.go_absolute = True
 
-# Test context that inherits build context to make configuration available
-class TestContext(Build.BuildContext):
-    "Run tests"
-    cmd = 'test'
-    fun = 'test'
-
 @feature('c', 'cxx')
 @after('apply_incpaths')
 def include_config_h(self):
     self.env.append_value('INCPATHS', self.bld.bldnode.abspath())
 
-def set_options(opt, debug_by_default=False, test=False):
-    "Add standard autowaf options if they havn't been added yet"
-    global g_step
-    if g_step > 0:
-        return
+class OptionsContext(Options.OptionsContext):
+    def __init__(self, **kwargs):
+        super(OptionsContext, self).__init__(**kwargs)
+        set_options(self)
 
+    def configuration_options(self):
+        return self.get_option_group('Configuration options')
+
+    def add_flags(self, group, flags):
+        """Tersely add flags (a dictionary of longname:desc) to a group"""
+        for name, desc in flags.items():
+            group.add_option('--' + name, action='store_true',
+                             dest=name.replace('-', '_'), help=desc)
+
+def set_options(opt, debug_by_default=False):
+    "Add standard autowaf options"
     opts = opt.get_option_group('Configuration options')
 
     # Standard directory options
@@ -77,7 +83,7 @@ def set_options(opt, debug_by_default=False, test=False):
                     help="build documentation (requires doxygen)")
 
     # Test options
-    if test:
+    if hasattr(Context.g_module, 'test'):
         test_opts = opt.add_option_group('Test options', '')
         opts.add_option('-T', '--test', action='store_true', dest='build_tests',
                         help='build unit tests')
@@ -88,12 +94,41 @@ def set_options(opt, debug_by_default=False, test=False):
                              dest='test_wrapper',
                              help='command prefix for tests (e.g. valgrind)')
 
-    g_step = 1
+    # Run options
+    run_opts = opt.add_option_group('Run options')
+    run_opts.add_option('--cmd', type='string', dest='cmd',
+                        help='command to run from build directory')
+
+class ConfigureContext(Configure.ConfigurationContext):
+    """configures the project"""
 
-def add_flags(opt, flags):
-    for name, desc in flags.items():
-        opt.add_option('--' + name, action='store_true',
-                       dest=name.replace('-', '_'), help=desc)
+    def __init__(self, **kwargs):
+        self.line_just = 45
+        if hasattr(Context.g_module, 'line_just'):
+            self.line_just = Context.g_module.line_just
+
+        super(ConfigureContext, self).__init__(**kwargs)
+        self.run_env = ConfigSet.ConfigSet()
+        self.system_include_paths = set()
+
+    def pre_recurse(self, node):
+        if len(self.stack_path) == 1:
+            Logs.pprint('BOLD', 'Configuring %s' % node.parent.srcpath())
+        super(ConfigureContext, self).pre_recurse(node)
+
+    def store(self):
+        self.env.AUTOWAF_RUN_ENV = self.run_env.get_merged_dict()
+        for path in sorted(self.system_include_paths):
+            if 'COMPILER_CC' in self.env:
+                self.env.append_value('CFLAGS', ['-isystem', path])
+            if 'COMPILER_CXX' in self.env:
+                self.env.append_value('CXXFLAGS', ['-isystem', path])
+
+        super(ConfigureContext, self).store()
+
+    def build_path(self, path='.'):
+        """Return `path` within the build directory"""
+        return str(self.path.get_bld().find_node(path))
 
 def get_check_func(conf, lang):
     if lang == 'c':
@@ -179,14 +214,8 @@ def check_pkg(conf, name, **args):
         conf.env[var_name] = CheckType.OPTIONAL
 
     if not conf.env.MSVC_COMPILER and 'system' in args and args['system']:
-        includes = conf.env['INCLUDES_' + nameify(args['uselib_store'])]
-        for path in includes:
-            if 'COMPILER_CC' in conf.env:
-                conf.env.append_value('CFLAGS', ['-isystem', path])
-            if 'COMPILER_CXX' in conf.env:
-                conf.env.append_value('CXXFLAGS', ['-isystem', path])
-
-        conf.env.append_value('CXXFLAGS', ['-isystem', '/usr/local/include'])
+        conf.system_include_paths.update(
+            conf.env['INCLUDES_' + nameify(args['uselib_store'])])
 
 def normpath(path):
     if sys.platform == 'win32':
@@ -195,10 +224,6 @@ def normpath(path):
         return os.path.normpath(path)
 
 def configure(conf):
-    global g_step
-    if g_step > 1:
-        return
-
     def append_cxx_flags(flags):
         conf.env.append_value('CFLAGS', flags)
         conf.env.append_value('CXXFLAGS', flags)
@@ -344,11 +369,9 @@ def configure(conf):
 
     conf.env.prepend_value('CFLAGS', '-I' + os.path.abspath('.'))
     conf.env.prepend_value('CXXFLAGS', '-I' + os.path.abspath('.'))
-    g_step = 2
 
 def display_summary(conf, msgs=None):
-    global g_is_child
-    if not g_is_child:
+    if len(conf.stack_path) == 1:
         display_msg(conf, "Install prefix", conf.env['PREFIX'])
         if 'COMPILER_CC' in conf.env:
             display_msg(conf, "C Flags", ' '.join(conf.env['CFLAGS']))
@@ -463,25 +486,17 @@ def set_lib_env(conf, name, version):
     major_ver    = version.split('.')[0]
     pkg_var_name = 'PKG_' + name.replace('-', '_') + '_' + major_ver
     lib_name     = '%s-%s' % (name, major_ver)
+    lib_path     = [str(conf.path.get_bld())]
     if conf.env.PARDEBUG:
         lib_name += 'D'
     conf.env[pkg_var_name]       = lib_name
     conf.env['INCLUDES_' + NAME] = ['${INCLUDEDIR}/%s-%s' % (name, major_ver)]
-    conf.env['LIBPATH_' + NAME]  = [conf.env.LIBDIR]
+    conf.env['LIBPATH_' + NAME]  = lib_path
     conf.env['LIB_' + NAME]      = [lib_name]
 
+    conf.run_env.append_unique(lib_path_name, lib_path)
     conf.define(NAME + '_VERSION', version)
 
-def set_line_just(conf, width):
-    global line_just
-    line_just = max(line_just, width)
-    conf.line_just = line_just
-
-def display_header(title):
-    global g_is_child
-    if g_is_child:
-        Logs.pprint('BOLD', title)
-
 def display_msg(conf, msg, status=None, color=None):
     color = 'CYAN'
     if type(status) == bool and status:
@@ -613,7 +628,8 @@ def make_simple_dox(name):
         os.chdir(top)
     except Exception as e:
         Logs.error("Failed to fix up %s documentation: %s" % (name, e))
-
+    finally:
+        os.chdir(top)
 
 def build_dox(bld, name, version, srcdir, blddir, outdir='', versioned=True):
     """Build Doxygen API documentation"""
@@ -744,18 +760,76 @@ def build_i18n(bld, srcdir, dir, name, sources, copyright_holder=None):
     build_i18n_po(bld, srcdir, dir, name, sources, copyright_holder)
     build_i18n_mo(bld, srcdir, dir, name, sources, copyright_holder)
 
-def cd_to_build_dir(ctx, appname):
-    top_level = (len(ctx.stack_path) > 1)
-    if top_level:
-        os.chdir(os.path.join('build', appname))
-    else:
-        os.chdir('build')
+class ExecutionEnvironment:
+    """Context that sets system environment variables for program execution"""
+    def __init__(self, changes):
+        self.original_environ = os.environ.copy()
 
-def cd_to_orig_dir(ctx, child):
-    if child:
-        os.chdir(os.path.join('..', '..'))
-    else:
-        os.chdir('..')
+        self.diff = {}
+        for path_name, paths in changes.items():
+            value = os.pathsep.join(paths)
+            if path_name in os.environ:
+                value += os.pathsep + os.environ[path_name]
+
+            self.diff[path_name] = value
+
+        os.environ.update(self.diff)
+
+    def __str__(self):
+        return '\n'.join({'%s="%s"' % (k, v) for k, v in self.diff.items()})
+
+    def __enter__(self):
+        return self
+
+    def __exit__(self, type, value, traceback):
+        os.environ = self.original_environ
+
+class RunContext(Build.BuildContext):
+    "runs an executable from the build directory"
+    cmd = 'run'
+
+    def execute(self):
+        self.restore()
+        if not self.all_envs:
+            self.load_envs()
+
+        with ExecutionEnvironment(self.env.AUTOWAF_RUN_ENV) as env:
+            if Options.options.verbose:
+                Logs.pprint('GREEN', str(env) + '\n')
+
+            if Options.options.cmd:
+                Logs.pprint('GREEN', 'Running %s' % Options.options.cmd)
+                subprocess.call(Options.options.cmd, shell=True)
+            else:
+                Logs.error("error: Missing --cmd option for run command")
+
+def show_diff(from_lines, to_lines, from_filename, to_filename):
+    import difflib
+    import sys
+
+    for line in difflib.unified_diff(
+            from_lines, to_lines,
+            fromfile=os.path.abspath(from_filename),
+            tofile=os.path.abspath(to_filename)):
+        sys.stderr.write(line)
+
+def test_file_equals(patha, pathb):
+    import filecmp
+    import io
+
+    for path in (patha, pathb):
+        if not os.access(path, os.F_OK):
+            Logs.pprint('RED', 'error: missing file %s' % path)
+            return False
+
+    if filecmp.cmp(patha, pathb, shallow=False):
+        return True
+
+    with io.open(patha, 'rU', encoding='utf-8') as fa:
+        with io.open(pathb, 'rU', encoding='utf-8') as fb:
+            show_diff(fa.readlines(), fb.readlines(), patha, pathb)
+
+    return False
 
 def bench_time():
     if hasattr(time, 'perf_counter'): # Added in Python 3.3
@@ -763,207 +837,308 @@ def bench_time():
     else:
         return time.time()
 
-def pre_test(ctx, appname, dirs=['src']):
-    Logs.pprint('GREEN', '\n[==========] Running %s tests' % appname)
-
-    if not hasattr(ctx, 'autowaf_tests_total'):
-        ctx.autowaf_tests_start_time   = bench_time()
-        ctx.autowaf_tests_total        = 0
-        ctx.autowaf_tests_failed       = 0
-        ctx.autowaf_local_tests_total  = 0
-        ctx.autowaf_local_tests_failed = 0
-        ctx.autowaf_tests              = {}
-
-    ctx.autowaf_tests[appname] = {'total': 0, 'failed': 0}
-
-    cd_to_build_dir(ctx, appname)
-    if not ctx.env.NO_COVERAGE:
-        diropts  = ''
-        for i in dirs:
-            diropts += ' -d ' + i
-        clear_log = open('lcov-clear.log', 'w')
-        try:
-            try:
-                # Clear coverage data
-                subprocess.call(('lcov %s -z' % diropts).split(),
-                                stdout=clear_log, stderr=clear_log)
-            except Exception:
-                Logs.warn('Failed to run lcov, no coverage report generated')
-        finally:
-            clear_log.close()
-
-class TestFailed(Exception):
-    pass
-
-def post_test(ctx, appname, dirs=['src'], remove=['*boost*', 'c++*']):
-    if not ctx.env.NO_COVERAGE:
-        diropts  = ''
-        for i in dirs:
-            diropts += ' -d ' + i
-        coverage_log           = open('lcov-coverage.log', 'w')
-        coverage_lcov          = open('coverage.lcov', 'w')
-        coverage_stripped_lcov = open('coverage-stripped.lcov', 'w')
+class TestOutput:
+    """Test output that is truthy if result is as expected"""
+    def __init__(self, expected, result=None):
+        self.stdout = self.stderr = None
+        self.expected = expected
+        self.result = result
+
+    def __bool__(self):
+        return self.expected is None or self.result == self.expected
+
+    __nonzero__ = __bool__
+
+def is_string(s):
+    if sys.version_info[0] < 3:
+        return isinstance(s, basestring)
+    return isinstance(s, str)
+
+class TestScope:
+    """Scope for running tests that maintains pass/fail statistics"""
+    def __init__(self, tst, name, defaults):
+        self.tst = tst
+        self.name = name
+        self.defaults = defaults
+        self.n_failed = 0
+        self.n_total = 0
+
+    def run(self, test, **kwargs):
+        if callable(test):
+            output = self._run_callable(test, **kwargs)
+        elif type(test) == list:
+            if 'name' not in kwargs:
+                import pipes
+                kwargs['name'] = ' '.join(map(pipes.quote, test))
+
+            output = self._run_command(test, **kwargs)
+        else:
+            raise Exception("Unknown test type")
+
+        if not output:
+            self.tst.log_bad('FAILED', kwargs['name'])
+
+        return self.tst.test_result(output)
+
+    def _run_callable(self, test, **kwargs):
+        expected = kwargs['expected'] if 'expected' in kwargs else True
+        return TestOutput(expected, test())
+
+    def _run_command(self, test, **kwargs):
+        if 'stderr' in kwargs and kwargs['stderr'] == NONEMPTY:
+            # Run with a temp file for stderr and check that it is non-empty
+            import tempfile
+            with tempfile.TemporaryFile(mode='w') as stderr:
+                kwargs['stderr'] = stderr
+                output = self.run(test, **kwargs)
+                return (output if not output else
+                        self.run(
+                            lambda: stderr.tell() > 0,
+                            name=kwargs['name'] + ' error message'))
+
         try:
-            try:
-                base = '.'
-                if g_is_child:
-                    base = '..'
-
-                # Generate coverage data
-                lcov_cmd = 'lcov -c %s -b %s' % (diropts, base)
-                if ctx.env.LLVM_COV:
-                    lcov_cmd += ' --gcov-tool %s' % ctx.env.LLVM_COV[0]
-                subprocess.call(lcov_cmd.split(),
-                                stdout=coverage_lcov, stderr=coverage_log)
-
-                # Strip unwanted stuff
-                subprocess.call(
-                    ['lcov', '--remove', 'coverage.lcov'] + remove,
-                    stdout=coverage_stripped_lcov, stderr=coverage_log)
-
-                # Generate HTML coverage output
-                if not os.path.isdir('coverage'):
-                    os.makedirs('coverage')
-                subprocess.call(
-                    'genhtml -o coverage coverage-stripped.lcov'.split(),
-                    stdout=coverage_log, stderr=coverage_log)
-
-            except Exception:
-                Logs.warn('Failed to run lcov, no coverage report generated')
+            # Run with stdout and stderr set to the appropriate streams
+            out_stream = self._stream('stdout', kwargs)
+            err_stream = self._stream('stderr', kwargs)
+            return self._exec(test, **kwargs)
         finally:
-            coverage_stripped_lcov.close()
-            coverage_lcov.close()
-            coverage_log.close()
-
-    duration = (bench_time() - ctx.autowaf_tests_start_time) * 1000.0
-    total_tests = ctx.autowaf_tests[appname]['total']
-    failed_tests = ctx.autowaf_tests[appname]['failed']
-    passed_tests = total_tests - failed_tests
-    Logs.pprint('GREEN', '\n[==========] %d tests from %s ran (%d ms total)' % (
-        total_tests, appname, duration))
-    if not ctx.env.NO_COVERAGE:
-        Logs.pprint('GREEN', '[----------] Coverage: <file://%s>'
-                    % os.path.abspath('coverage/index.html'))
-
-    Logs.pprint('GREEN', '[  PASSED  ] %d tests' % passed_tests)
-    if failed_tests > 0:
-        Logs.pprint('RED', '[  FAILED  ] %d tests' % failed_tests)
-        raise TestFailed('Tests from %s failed' % appname)
-    Logs.pprint('', '')
-
-    top_level = (len(ctx.stack_path) > 1)
-    if top_level:
-        cd_to_orig_dir(ctx, top_level)
-
-def run_test(ctx,
-             appname,
-             test,
-             desired_status=0,
-             dirs=['src'],
-             name='',
-             header=False,
-             quiet=False):
-    """Run an individual test.
-
-    `test` is either a shell command string, or a list of [name, return status]
-    for displaying tests implemented in the calling Python code.
-    """
-
-    ctx.autowaf_tests_total += 1
-    ctx.autowaf_local_tests_total += 1
-    ctx.autowaf_tests[appname]['total'] += 1
+            out_stream = out_stream.close() if out_stream else None
+            err_stream = err_stream.close() if err_stream else None
+
+    def _stream(self, stream_name, kwargs):
+        s = kwargs[stream_name] if stream_name in kwargs else None
+        if is_string(s):
+            kwargs[stream_name] = open(s, 'wb')
+            return kwargs[stream_name]
+        return None
+
+    def _exec(self,
+              test,
+              expected=0,
+              name='',
+              stdin=None,
+              stdout=None,
+              stderr=None,
+              verbosity=1):
+        def stream(s):
+            return open(s, 'wb') if type(s) == str else s
+
+        if verbosity > 1:
+            self.tst.log_good('RUN     ', name)
 
-    out = (None, None)
-    if type(test) == list:
-        name       = test[0]
-        returncode = test[1]
-    elif callable(test):
-        returncode = test()
-    else:
-        s = test
-        if isinstance(test, type([])):
-            s = ' '.join(test)
-        if header and not quiet:
-            Logs.pprint('Green', '\n[ RUN      ] %s' % s)
-        cmd = test
         if Options.options.test_wrapper:
-            cmd = Options.options.test_wrapper + ' ' + test
-        if name == '':
-            name = test
-
-        proc = subprocess.Popen(cmd, shell=True,
-                                stdout=subprocess.PIPE, stderr=subprocess.PIPE)
-        out = proc.communicate()
-        returncode = proc.returncode
-
-    success = desired_status is None or returncode == desired_status
-    if success:
-        if not quiet:
-            Logs.pprint('GREEN', '[       OK ] %s' % name)
-    else:
-        Logs.pprint('RED', '[  FAILED  ] %s' % name)
-        ctx.autowaf_tests_failed += 1
-        ctx.autowaf_local_tests_failed += 1
-        ctx.autowaf_tests[appname]['failed'] += 1
-        if type(test) != list and not callable(test):
-            Logs.pprint('RED', test)
-
-    if Options.options.verbose and type(test) != list and not callable(test):
-        sys.stdout.write(out[0].decode('utf-8'))
-        sys.stderr.write(out[1].decode('utf-8'))
-
-    return (success, out)
-
-def tests_name(ctx, appname, name='*'):
-    if name == '*':
-        return appname
-    else:
-        return '%s.%s' % (appname, name)
+            test = [Options.options.test_wrapper] + test
 
-def begin_tests(ctx, appname, name='*'):
-    ctx.autowaf_local_tests_failed = 0
-    ctx.autowaf_local_tests_total  = 0
-    ctx.autowaf_local_tests_start_time = bench_time()
-    Logs.pprint('GREEN', '\n[----------] %s' % (
-        tests_name(ctx, appname, name)))
+        output = TestOutput(expected)
+        with open(os.devnull, 'wb') as null:
+            out = null if verbosity < 3 and not stdout else stdout
+            err = null if verbosity < 2 and not stderr else stderr
+            proc = subprocess.Popen(test, stdin=stdin, stdout=out, stderr=err)
+            output.stdout, output.stderr = proc.communicate()
+            output.result = proc.returncode
 
-    class Handle:
-        def __enter__(self):
-            pass
+        if output and verbosity > 0:
+            self.tst.log_good('      OK', name)
 
-        def __exit__(self, type, value, traceback):
-            end_tests(ctx, appname, name)
+        return output
 
-    return Handle()
+class TestContext(Build.BuildContext):
+    "runs test suite"
+    fun = cmd = 'test'
 
-def end_tests(ctx, appname, name='*'):
-    duration = (bench_time() - ctx.autowaf_local_tests_start_time) * 1000.0
-    total = ctx.autowaf_local_tests_total
-    failures = ctx.autowaf_local_tests_failed
-    if failures == 0:
-        Logs.pprint('GREEN', '[----------] %d tests from %s (%d ms total)' % (
-            ctx.autowaf_local_tests_total, tests_name(ctx, appname, name), duration))
-    else:
-        Logs.pprint('RED', '[----------] %d/%d tests from %s (%d ms total)' % (
-            total - failures, total, tests_name(ctx, appname, name), duration))
-
-def run_tests(ctx,
-              appname,
-              tests,
-              desired_status=0,
-              dirs=['src'],
-              name='*',
-              headers=False):
-    begin_tests(ctx, appname, name)
-
-    diropts  = ''
-    for i in dirs:
-        diropts += ' -d ' + i
-
-    for i in tests:
-        run_test(ctx, appname, i, desired_status, dirs, i, headers)
-
-    end_tests(ctx, appname, name)
+    def __init__(self, **kwargs):
+        super(TestContext, self).__init__(**kwargs)
+        self.start_time = bench_time()
+        self.max_depth = 1
+
+        defaults = {'verbosity': Options.options.verbose}
+        self.stack = [TestScope(self, Context.g_module.APPNAME, defaults)]
+
+    def defaults(self):
+        return self.stack[-1].defaults
+
+    def finalize(self):
+        if self.stack[-1].n_failed > 0:
+            sys.exit(1)
+
+        super(TestContext, self).finalize()
+
+    def __call__(self, test, **kwargs):
+        return self.stack[-1].run(test, **self.args(**kwargs))
+
+    def file_equals(self, from_path, to_path, **kwargs):
+        kwargs.update({'expected': True,
+                       'name': '%s == %s' % (from_path, to_path)})
+        return self(lambda: test_file_equals(from_path, to_path), **kwargs)
+
+    def log_good(self, title, fmt, *args):
+        Logs.pprint('GREEN', '[%s] %s' % (title.center(10), fmt % args))
+
+    def log_bad(self, title, fmt, *args):
+        Logs.pprint('RED', '[%s] %s' % (title.center(10), fmt % args))
+
+    def pre_recurse(self, node):
+        wscript_module = Context.load_module(node.abspath())
+        group_name = wscript_module.APPNAME
+        self.stack.append(TestScope(self, group_name, self.defaults()))
+        self.max_depth = max(self.max_depth, len(self.stack) - 1)
+
+        bld_dir = node.get_bld().parent
+        if bld_dir != self.path.get_bld():
+            Logs.info('')
+
+        self.original_dir = os.getcwd()
+        Logs.info("Waf: Entering directory `%s'\n", bld_dir)
+        os.chdir(str(bld_dir))
+
+        if str(node.parent) == Context.top_dir:
+            self.clear_coverage()
+
+        self.log_good('=' * 10, 'Running %s tests', group_name)
+        super(TestContext, self).pre_recurse(node)
+
+    def test_result(self, success):
+        self.stack[-1].n_total += 1
+        self.stack[-1].n_failed += 1 if not success else 0
+        return success
+
+    def pop(self):
+        scope = self.stack.pop()
+        self.stack[-1].n_total += scope.n_total
+        self.stack[-1].n_failed += scope.n_failed
+        return scope
+
+    def post_recurse(self, node):
+        super(TestContext, self).post_recurse(node)
+
+        scope = self.pop()
+        duration = (bench_time() - self.start_time) * 1000.0
+        is_top = str(node.parent) == str(Context.top_dir)
+
+        if is_top and self.max_depth > 1:
+            Logs.info('')
+
+        self.log_good('=' * 10, '%d tests from %s ran (%d ms total)',
+                      scope.n_total, scope.name, duration)
+
+        if not self.env.NO_COVERAGE:
+            if is_top:
+                self.gen_coverage()
+
+            if os.path.exists('coverage/index.html'):
+                self.log_good('COVERAGE', '<file://%s>',
+                              os.path.abspath('coverage/index.html'))
+
+        successes = scope.n_total - scope.n_failed
+        Logs.pprint('GREEN', '[  PASSED  ] %d tests' % successes)
+        if scope.n_failed > 0:
+            Logs.pprint('RED', '[  FAILED  ] %d tests' % scope.n_failed)
+        if is_top:
+            Logs.info("\nWaf: Leaving directory `%s'" % os.getcwd())
+
+        os.chdir(self.original_dir)
+
+    def execute(self):
+        self.restore()
+        if not self.all_envs:
+            self.load_envs()
+
+        if not self.env.BUILD_TESTS:
+            self.fatal('Configuration does not include tests')
+
+        with ExecutionEnvironment(self.env.AUTOWAF_RUN_ENV) as env:
+            if self.defaults()['verbosity'] > 0:
+                Logs.pprint('GREEN', str(env) + '\n')
+            self.recurse([self.run_dir])
+
+    def src_path(self, path):
+        return os.path.relpath(os.path.join(str(self.path), path))
+
+    def args(self, **kwargs):
+        all_kwargs = self.defaults().copy()
+        all_kwargs.update(kwargs)
+        return all_kwargs
+
+    def group(self, name, **kwargs):
+        return TestGroup(
+            self, self.stack[-1].name, name, **self.args(**kwargs))
+
+    def set_test_defaults(self, **kwargs):
+        """Set default arguments to be passed to all tests"""
+        self.stack[-1].defaults.update(kwargs)
+
+    def clear_coverage(self):
+        """Zero old coverage data"""
+        try:
+            with open('cov-clear.log', 'w') as log:
+                subprocess.call(['lcov', '-z', '-d', str(self.path)],
+                                stdout=log, stderr=log)
+
+        except Exception:
+            Logs.warn('Failed to run lcov to clear old coverage data')
+
+    def gen_coverage(self):
+        """Generate coverage data and report"""
+        try:
+            with open('cov.lcov', 'w') as out:
+                with open('cov.log', 'w') as err:
+                    subprocess.call(['lcov', '-c', '--no-external',
+                                     '--rc', 'lcov_branch_coverage=1',
+                                     '-b', '.',
+                                     '-d', str(self.path)],
+                                    stdout=out, stderr=err)
+
+            if not os.path.isdir('coverage'):
+                os.makedirs('coverage')
+
+            with open('genhtml.log', 'w') as log:
+                subprocess.call(['genhtml',
+                                 '-o', 'coverage',
+                                 '--rc', 'genhtml_branch_coverage=1',
+                                 'cov.lcov'],
+                                stdout=log, stderr=log)
+
+        except Exception:
+            Logs.warn('Failed to run lcov to generate coverage report')
+
+class TestGroup:
+    def __init__(self, tst, suitename, name, **kwargs):
+        self.tst = tst
+        self.suitename = suitename
+        self.name = name
+        self.kwargs = kwargs
+        self.start_time = bench_time()
+        tst.stack.append(TestScope(tst, name, tst.defaults()))
+
+    def label(self):
+        return self.suitename + '.%s' % self.name if self.name else ''
+
+    def args(self, **kwargs):
+        all_kwargs = self.tst.args(**self.kwargs)
+        all_kwargs.update(kwargs)
+        return all_kwargs
+
+    def __enter__(self):
+        if 'verbosity' in self.kwargs and self.kwargs['verbosity'] > 0:
+            self.tst.log_good('-' * 10, self.label())
+        return self
+
+    def __call__(self, test, **kwargs):
+        return self.tst(test, **self.args(**kwargs))
+
+    def file_equals(self, from_path, to_path, **kwargs):
+        return self.tst.file_equals(from_path, to_path, **kwargs)
+
+    def __exit__(self, type, value, traceback):
+        duration = (bench_time() - self.start_time) * 1000.0
+        scope = self.tst.pop()
+        n_passed = scope.n_total - scope.n_failed
+        if scope.n_failed == 0:
+            self.tst.log_good('-' * 10, '%d tests from %s (%d ms total)',
+                              scope.n_total, self.label(), duration)
+        else:
+            self.tst.log_bad('-' * 10, '%d/%d tests from %s (%d ms total)',
+                             n_passed, scope.n_total, self.label(), duration)
 
 def run_ldconfig(ctx):
     should_run = (ctx.cmd == 'install' and
diff --git a/extras/buildcopy.py b/extras/buildcopy.py
index a6d9ac83..eaff7e60 100644
--- a/extras/buildcopy.py
+++ b/extras/buildcopy.py
@@ -22,7 +22,7 @@ Examples::
 
 """
 import os, shutil
-from waflib import Errors, Task, TaskGen, Utils, Node
+from waflib import Errors, Task, TaskGen, Utils, Node, Logs
 
 @TaskGen.before_method('process_source')
 @TaskGen.feature('buildcopy')
@@ -58,10 +58,13 @@ def make_buildcopy(self):
 		raise Errors.WafError('buildcopy: File not found in src: %s'%os.path.join(*lst))
 
 	nodes = [ to_src_nodes(n) for n in getattr(self, 'buildcopy_source', getattr(self, 'source', [])) ]
+	if not nodes:
+		Logs.warn('buildcopy: No source files provided to buildcopy in %s (set `buildcopy_source` or `source`)',
+			self)
+		return
 	node_pairs = [(n, n.get_bld()) for n in nodes]
 	self.create_task('buildcopy', [n[0] for n in node_pairs], [n[1] for n in node_pairs], node_pairs=node_pairs)
 
-
 class buildcopy(Task.Task):
 	"""
 	Copy for each pair `n` in `node_pairs`: n[0] -> n[1].
diff --git a/extras/cpplint.py b/extras/cpplint.py
index e3302e5b..8cdd6dda 100644
--- a/extras/cpplint.py
+++ b/extras/cpplint.py
@@ -43,12 +43,12 @@ from waflib import Errors, Task, TaskGen, Logs, Options, Node, Utils
 
 critical_errors = 0
 CPPLINT_FORMAT = '[CPPLINT] %(filename)s:\nline %(linenum)s, severity %(confidence)s, category: %(category)s\n%(message)s\n'
-RE_EMACS = re.compile('(?P<filename>.*):(?P<linenum>\d+):  (?P<message>.*)  \[(?P<category>.*)\] \[(?P<confidence>\d+)\]')
+RE_EMACS = re.compile(r'(?P<filename>.*):(?P<linenum>\d+):  (?P<message>.*)  \[(?P<category>.*)\] \[(?P<confidence>\d+)\]')
 CPPLINT_RE = {
     'waf': RE_EMACS,
     'emacs': RE_EMACS,
-    'vs7': re.compile('(?P<filename>.*)\((?P<linenum>\d+)\):  (?P<message>.*)  \[(?P<category>.*)\] \[(?P<confidence>\d+)\]'),
-    'eclipse': re.compile('(?P<filename>.*):(?P<linenum>\d+): warning: (?P<message>.*)  \[(?P<category>.*)\] \[(?P<confidence>\d+)\]'),
+    'vs7': re.compile(r'(?P<filename>.*)\((?P<linenum>\d+)\):  (?P<message>.*)  \[(?P<category>.*)\] \[(?P<confidence>\d+)\]'),
+    'eclipse': re.compile(r'(?P<filename>.*):(?P<linenum>\d+): warning: (?P<message>.*)  \[(?P<category>.*)\] \[(?P<confidence>\d+)\]'),
 }
 CPPLINT_STR = ('${CPPLINT} '
                '--verbose=${CPPLINT_LEVEL} '
diff --git a/extras/cython.py b/extras/cython.py
index 481d6f4c..591c274d 100644
--- a/extras/cython.py
+++ b/extras/cython.py
@@ -8,8 +8,9 @@ from waflib.TaskGen import extension
 
 cy_api_pat = re.compile(r'\s*?cdef\s*?(public|api)\w*')
 re_cyt = re.compile(r"""
-	(?:from\s+(\w+)\s+)?   # optionally match "from foo" and capture foo
-	c?import\s(\w+|[*])    # require "import bar" and capture bar
+	^\s*                           # must begin with some whitespace characters
+	(?:from\s+(\w+)(?:\.\w+)*\s+)? # optionally match "from foo(.baz)" and capture foo
+	c?import\s(\w+|[*])            # require "import bar" and capture bar
 	""", re.M | re.VERBOSE)
 
 @extension('.pyx')
@@ -85,12 +86,12 @@ class cython(Task.Task):
 		node = self.inputs[0]
 		txt = node.read()
 
-		mods = []
+		mods = set()
 		for m in re_cyt.finditer(txt):
 			if m.group(1):  # matches "from foo import bar"
-				mods.append(m.group(1))
+				mods.add(m.group(1))
 			else:
-				mods.append(m.group(2))
+				mods.add(m.group(2))
 
 		Logs.debug('cython: mods %r', mods)
 		incs = getattr(self.generator, 'cython_includes', [])
@@ -99,7 +100,7 @@ class cython(Task.Task):
 
 		found = []
 		missing = []
-		for x in mods:
+		for x in sorted(mods):
 			for y in incs:
 				k = y.find_resource(x + '.pxd')
 				if k:
diff --git a/extras/distnet.py b/extras/distnet.py
index 09a31a6d..ff3ed8e1 100644
--- a/extras/distnet.py
+++ b/extras/distnet.py
@@ -44,7 +44,7 @@ TARFORMAT = 'w:bz2'
 TIMEOUT = 60
 REQUIRES = 'requires.txt'
 
-re_com = re.compile('\s*#.*', re.M)
+re_com = re.compile(r'\s*#.*', re.M)
 
 def total_version_order(num):
 	lst = num.split('.')
diff --git a/extras/erlang.py b/extras/erlang.py
index 49f6d5b4..0b93d9a4 100644
--- a/extras/erlang.py
+++ b/extras/erlang.py
@@ -51,7 +51,7 @@ class erl(Task.Task):
 			if n.abspath() in scanned:
 				continue
 
-			for i in re.findall('-include\("(.*)"\)\.', n.read()):
+			for i in re.findall(r'-include\("(.*)"\)\.', n.read()):
 				for d in task.erlc_incnodes:
 					r = d.find_node(i)
 					if r:
diff --git a/extras/fast_partial.py b/extras/fast_partial.py
index b3af513b..d5b61448 100644
--- a/extras/fast_partial.py
+++ b/extras/fast_partial.py
@@ -17,7 +17,7 @@ Usage::
 	def options(opt):
 		opt.load('fast_partial')
 
-Assuptions:
+Assumptions:
 * Mostly for C/C++/Fortran targets with link tasks (object-only targets are not handled)
 * For full project builds: no --targets and no pruning from subfolders
 * The installation phase is ignored
diff --git a/extras/fc_nfort.py b/extras/fc_nfort.py
new file mode 100644
index 00000000..c25886b8
--- /dev/null
+++ b/extras/fc_nfort.py
@@ -0,0 +1,52 @@
+#! /usr/bin/env python
+# encoding: utf-8
+# Detection of the NEC Fortran compiler for Aurora Tsubasa
+
+import re
+from waflib.Tools import fc,fc_config,fc_scan
+from waflib.Configure import conf
+from waflib.Tools.compiler_fc import fc_compiler
+fc_compiler['linux'].append('fc_nfort')
+
+@conf
+def find_nfort(conf):
+	fc=conf.find_program(['nfort'],var='FC')
+	conf.get_nfort_version(fc)
+	conf.env.FC_NAME='NFORT'
+	conf.env.FC_MOD_CAPITALIZATION='lower'
+
+@conf
+def nfort_flags(conf):
+	v=conf.env
+	v['_FCMODOUTFLAGS']=[]
+	v['FCFLAGS_DEBUG']=[]
+	v['FCFLAGS_fcshlib']=[]
+	v['LINKFLAGS_fcshlib']=[]
+	v['FCSTLIB_MARKER']=''
+	v['FCSHLIB_MARKER']=''
+
+@conf
+def get_nfort_version(conf,fc):
+	version_re=re.compile(r"nfort\s*\(NFORT\)\s*(?P<major>\d+)\.(?P<minor>\d+)\.",re.I).search
+	cmd=fc+['--version']
+	out,err=fc_config.getoutput(conf,cmd,stdin=False)
+	if out:
+		match=version_re(out)
+	else:
+		match=version_re(err)
+	if not match:
+		return(False)
+		conf.fatal('Could not determine the NEC NFORT Fortran compiler version.')
+	else:
+		k=match.groupdict()
+		conf.env['FC_VERSION']=(k['major'],k['minor'])
+
+def configure(conf):
+	conf.find_nfort()
+	conf.find_program('nar',var='AR')
+	conf.add_os_flags('ARFLAGS')
+	if not conf.env.ARFLAGS:
+		conf.env.ARFLAGS=['rcs']
+	conf.fc_flags()
+	conf.fc_add_flags()
+	conf.nfort_flags()
diff --git a/extras/gccdeps.py b/extras/gccdeps.py
index d9758ab3..bfabe72e 100644
--- a/extras/gccdeps.py
+++ b/extras/gccdeps.py
@@ -36,7 +36,7 @@ def scan(self):
 	names = []
 	return (nodes, names)
 
-re_o = re.compile("\.o$")
+re_o = re.compile(r"\.o$")
 re_splitter = re.compile(r'(?<!\\)\s+') # split by space, except when spaces are escaped
 
 def remove_makefile_rule_lhs(line):
@@ -197,7 +197,7 @@ def configure(conf):
 		except Errors.ConfigurationError:
 			pass
 		else:
-			conf.env.append_value('CFLAGS', gccdeps_flags)
+			conf.env.append_value('CFLAGS', flags)
 			conf.env.append_unique('ENABLE_GCCDEPS', 'c')
 
 	if conf.env.CXX_NAME in supported_compilers:
@@ -206,7 +206,7 @@ def configure(conf):
 		except Errors.ConfigurationError:
 			pass
 		else:
-			conf.env.append_value('CXXFLAGS', gccdeps_flags)
+			conf.env.append_value('CXXFLAGS', flags)
 			conf.env.append_unique('ENABLE_GCCDEPS', 'cxx')
 
 def options(opt):
diff --git a/extras/kde4.py b/extras/kde4.py
index e49a9ec0..aed9bfb5 100644
--- a/extras/kde4.py
+++ b/extras/kde4.py
@@ -71,7 +71,7 @@ def configure(self):
 	fu = re.compile('#(.*)\n')
 	txt = fu.sub('', txt)
 
-	setregexp = re.compile('([sS][eE][tT]\s*\()\s*([^\s]+)\s+\"([^"]+)\"\)')
+	setregexp = re.compile(r'([sS][eE][tT]\s*\()\s*([^\s]+)\s+\"([^"]+)\"\)')
 	found = setregexp.findall(txt)
 
 	for (_, key, val) in found:
diff --git a/extras/lv2.py b/extras/lv2.py
index 815987fc..ffcb2e77 100644
--- a/extras/lv2.py
+++ b/extras/lv2.py
@@ -10,6 +10,33 @@ def options(opt):
                          help='install LV2 bundles to user location')
     conf_opts.add_option('--lv2dir', type='string',
                          help='LV2 bundles [Default: LIBDIR/lv2]')
+
+def register_lv2_path(conf, path):
+    """Return the default LV2_PATH to use for this system"""
+    if 'LV2_PATH' not in conf.run_env and 'LV2_PATH' not in os.environ:
+        conf.run_env['LV2_PATH'] = [conf.env['LV2DIR']]
+
+    conf.run_env.append_unique('LV2_PATH', path)
+
+def default_lv2_path(conf):
+    """Return the default LV2_PATH for the build target as a list"""
+    if conf.env.DEST_OS == 'darwin':
+        return ['~/Library/Audio/Plug-Ins/LV2',
+                '~/.lv2',
+                '/usr/local/lib/lv2',
+                '/usr/lib/lv2',
+                '/Library/Audio/Plug-Ins/LV2']
+    elif conf.env.DEST_OS == 'haiku':
+        return ['~/.lv2',
+                '/boot/common/add-ons/lv2']
+    elif conf.env.DEST_OS == 'win32':
+        return ['%APPDATA%\\\\LV2',
+                '%COMMONPROGRAMFILES%\\\\LV2']
+    else:
+        libdirname = os.path.basename(conf.env.LIBDIR)
+        return ['~/.lv2',
+                '/usr/%s/lv2' % libdirname,
+                '/usr/local/%s/lv2' % libdirname]
     
 def configure(conf):
     def env_path(parent_dir_var, name):
@@ -43,5 +70,6 @@ def configure(conf):
         else:
             conf.env['LV2DIR'] = os.path.join(conf.env['LIBDIR'], 'lv2')
 
-    conf.env['LV2DIR'] = normpath(conf.env['LV2DIR'])
-
+    # Add default LV2_PATH to runtime environment for tests that use plugins
+    if 'LV2_PATH' not in os.environ:
+        conf.run_env['LV2_PATH'] = default_lv2_path(conf)
diff --git a/extras/ocaml.py b/extras/ocaml.py
index afe73c0c..7d785c6f 100644
--- a/extras/ocaml.py
+++ b/extras/ocaml.py
@@ -15,7 +15,7 @@ EXT_MLI = ['.mli']
 EXT_MLC = ['.c']
 EXT_ML  = ['.ml']
 
-open_re = re.compile('^\s*open\s+([a-zA-Z]+)(;;){0,1}$', re.M)
+open_re = re.compile(r'^\s*open\s+([a-zA-Z]+)(;;){0,1}$', re.M)
 foo = re.compile(r"""(\(\*)|(\*\))|("(\\.|[^"\\])*"|'(\\.|[^'\\])*'|.[^()*"'\\]*)""", re.M)
 def filter_comments(txt):
 	meh = [0]
diff --git a/extras/parallel_debug.py b/extras/parallel_debug.py
index 35883a3d..4ffec5e5 100644
--- a/extras/parallel_debug.py
+++ b/extras/parallel_debug.py
@@ -3,13 +3,16 @@
 # Thomas Nagy, 2007-2010 (ita)
 
 """
-Debugging helper for parallel compilation, outputs
-a file named pdebug.svg in the source directory::
+Debugging helper for parallel compilation.
+
+Copy it to your project and load it with::
 
 	def options(opt):
-		opt.load('parallel_debug')
+		opt.load('parallel_debug', tooldir='.')
 	def build(bld):
 		...
+
+The build will then output a file named pdebug.svg in the source directory.
 """
 
 import re, sys, threading, time, traceback
diff --git a/extras/pgicc.py b/extras/pgicc.py
index 9790b9cf..f8068d53 100644
--- a/extras/pgicc.py
+++ b/extras/pgicc.py
@@ -60,7 +60,7 @@ def get_pgi_version(conf, cc):
 	except Errors.WafError:
 		conf.fatal('Could not find pgi compiler %r' % cmd)
 
-	version = re.findall('^COMPVER\s*=(.*)', out, re.M)
+	version = re.findall(r'^COMPVER\s*=(.*)', out, re.M)
 	if len(version) != 1:
 		conf.fatal('Could not determine the compiler version')
 	return version[0]
diff --git a/extras/protoc.py b/extras/protoc.py
index f3cb4d86..839c510b 100644
--- a/extras/protoc.py
+++ b/extras/protoc.py
@@ -6,7 +6,7 @@
 import re, os
 from waflib.Task import Task
 from waflib.TaskGen import extension
-from waflib import Errors, Context
+from waflib import Errors, Context, Logs
 
 """
 A simple tool to integrate protocol buffers into your build system.
@@ -67,6 +67,13 @@ Example for Java:
                 protoc_includes = ['inc']) # for protoc to search dependencies
 
 
+Protoc includes passed via protoc_includes are either relative to the taskgen
+or to the project and are searched in this order.
+
+Include directories external to the waf project can also be passed to the
+extra by using protoc_extincludes
+
+                protoc_extincludes = ['/usr/include/pblib']
 
 
 Notes when using this tool:
@@ -82,7 +89,7 @@ Notes when using this tool:
 """
 
 class protoc(Task):
-	run_str = '${PROTOC} ${PROTOC_FL:PROTOC_FLAGS} ${PROTOC_ST:INCPATHS} ${PROTOC_ST:PROTOC_INCPATHS} ${SRC[0].bldpath()}'
+	run_str = '${PROTOC} ${PROTOC_FL:PROTOC_FLAGS} ${PROTOC_ST:INCPATHS} ${PROTOC_ST:PROTOC_INCPATHS} ${PROTOC_ST:PROTOC_EXTINCPATHS} ${SRC[0].bldpath()}'
 	color   = 'BLUE'
 	ext_out = ['.h', 'pb.cc', '.py', '.java']
 	def scan(self):
@@ -104,7 +111,17 @@ class protoc(Task):
 
 		if 'py' in self.generator.features or 'javac' in self.generator.features:
 			for incpath in getattr(self.generator, 'protoc_includes', []):
-				search_nodes.append(self.generator.bld.path.find_node(incpath))
+				incpath_node = self.generator.path.find_node(incpath)
+				if incpath_node:
+					search_nodes.append(incpath_node)
+				else:
+					# Check if relative to top-level for extra tg dependencies
+					incpath_node = self.generator.bld.path.find_node(incpath)
+					if incpath_node:
+						search_nodes.append(incpath_node)
+					else:
+						raise Errors.WafError('protoc: include path %r does not exist' % incpath)
+
 
 		def parse_node(node):
 			if node in seen:
@@ -126,7 +143,7 @@ class protoc(Task):
 		parse_node(node)
 		# Add also dependencies path to INCPATHS so protoc will find the included file
 		for deppath in nodes:
-			self.env.append_value('INCPATHS', deppath.parent.bldpath())
+			self.env.append_unique('INCPATHS', deppath.parent.bldpath())
 		return (nodes, names)
 
 @extension('.proto')
@@ -153,61 +170,11 @@ def process_protoc(self, node):
 		protoc_flags.append('--python_out=%s' % node.parent.get_bld().bldpath())
 
 	if 'javac' in self.features:
-		pkgname, javapkg, javacn, nodename = None, None, None, None
-		messages = []
-
-		# .java file name is done with some rules depending on .proto file content:
-		#   -) package is either derived from option java_package if present
-		#      or from package directive
-		#   -) file name is either derived from option java_outer_classname if present
-		#      or the .proto file is converted to camelcase. If a message
-		#      is named the same then the behaviour depends on protoc version
-		#
-		# See also: https://developers.google.com/protocol-buffers/docs/reference/java-generated#invocation
-
-		code = node.read().splitlines()
-		for line in code:
-			m = re.search(r'^package\s+(.*);', line)
-			if m:
-				pkgname = m.groups()[0]
-			m = re.search(r'^option\s+(\S*)\s*=\s*"(\S*)";', line)
-			if m:
-				optname = m.groups()[0]
-				if optname == 'java_package':
-					javapkg = m.groups()[1]
-				elif optname == 'java_outer_classname':
-					javacn = m.groups()[1]
-			if self.env.PROTOC_MAJOR > '2':
-				m = re.search(r'^message\s+(\w*)\s*{*', line)
-				if m:
-					messages.append(m.groups()[0])
-
-		if javapkg:
-			nodename = javapkg
-		elif pkgname:
-			nodename = pkgname
-		else:
-			raise Errors.WafError('Cannot derive java name from protoc file')
-
-		nodename = nodename.replace('.',os.sep) + os.sep
-		if javacn:
-			nodename += javacn + '.java'
-		else:
-			if self.env.PROTOC_MAJOR > '2' and node.abspath()[node.abspath().rfind(os.sep)+1:node.abspath().rfind('.')].title() in messages:
-				nodename += node.abspath()[node.abspath().rfind(os.sep)+1:node.abspath().rfind('.')].title().replace('_','') + 'OuterClass.java'
-			else:
-				nodename += node.abspath()[node.abspath().rfind(os.sep)+1:node.abspath().rfind('.')].title().replace('_','') + '.java'
-
-		java_node = node.parent.find_or_declare(nodename)
-		out_nodes.append(java_node)
-		protoc_flags.append('--java_out=%s' % node.parent.get_bld().bldpath())
-
 		# Make javac get also pick java code generated in build
 		if not node.parent.get_bld() in self.javac_task.srcdir:
 			self.javac_task.srcdir.append(node.parent.get_bld())
 
-	if not out_nodes:
-		raise Errors.WafError('Feature %r not supported by protoc extra' % self.features)
+		protoc_flags.append('--java_out=%s' % node.parent.get_bld().bldpath())
 
 	tsk = self.create_task('protoc', node, out_nodes)
 	tsk.env.append_value('PROTOC_FLAGS', protoc_flags)
@@ -219,9 +186,22 @@ def process_protoc(self, node):
 	# For C++ standard include files dirs are used,
 	# but this doesn't apply to Python for example
 	for incpath in getattr(self, 'protoc_includes', []):
-		incdirs.append(self.path.find_node(incpath).bldpath())
+		incpath_node = self.path.find_node(incpath)
+		if incpath_node:
+			incdirs.append(incpath_node.bldpath())
+		else:
+			# Check if relative to top-level for extra tg dependencies
+			incpath_node = self.bld.path.find_node(incpath)
+			if incpath_node:
+				incdirs.append(incpath_node.bldpath())
+			else:
+				raise Errors.WafError('protoc: include path %r does not exist' % incpath)
+
 	tsk.env.PROTOC_INCPATHS = incdirs
 
+	# Include paths external to the waf project (ie. shared pb repositories)
+	tsk.env.PROTOC_EXTINCPATHS = getattr(self, 'protoc_extincludes', [])
+
 	# PR2115: protoc generates output of .proto files in nested
 	# directories  by canonicalizing paths. To avoid this we have to pass
 	# as first include the full directory file of the .proto file
diff --git a/extras/pyqt5.py b/extras/pyqt5.py
index c21dfa72..80f43b88 100644
--- a/extras/pyqt5.py
+++ b/extras/pyqt5.py
@@ -111,9 +111,9 @@ def apply_pyqt5(self):
 	"""
 	The additional parameters are:
 
-	:param lang: list of translation files (\*.ts) to process
+	:param lang: list of translation files (\\*.ts) to process
 	:type lang: list of :py:class:`waflib.Node.Node` or string without the .ts extension
-	:param langname: if given, transform the \*.ts files into a .qrc files to include in the binary file
+	:param langname: if given, transform the \\*.ts files into a .qrc files to include in the binary file
 	:type langname: :py:class:`waflib.Node.Node` or string without the .qrc extension
 	"""
 	if getattr(self, 'lang', None):
diff --git a/extras/qt4.py b/extras/qt4.py
index 90cae7e0..d19a4dda 100644
--- a/extras/qt4.py
+++ b/extras/qt4.py
@@ -290,11 +290,11 @@ def apply_qt4(self):
 
 	The additional parameters are:
 
-	:param lang: list of translation files (\*.ts) to process
+	:param lang: list of translation files (\\*.ts) to process
 	:type lang: list of :py:class:`waflib.Node.Node` or string without the .ts extension
-	:param update: whether to process the C++ files to update the \*.ts files (use **waf --translate**)
+	:param update: whether to process the C++ files to update the \\*.ts files (use **waf --translate**)
 	:type update: bool
-	:param langname: if given, transform the \*.ts files into a .qrc files to include in the binary file
+	:param langname: if given, transform the \\*.ts files into a .qrc files to include in the binary file
 	:type langname: :py:class:`waflib.Node.Node` or string without the .qrc extension
 	"""
 	if getattr(self, 'lang', None):
diff --git a/extras/remote.py b/extras/remote.py
index 3b038f77..f43b600f 100644
--- a/extras/remote.py
+++ b/extras/remote.py
@@ -203,7 +203,7 @@ class remote(BuildContext):
 					Options.commands.remove(k)
 
 	def login_to_host(self, login):
-		return re.sub('(\w+@)', '', login)
+		return re.sub(r'(\w+@)', '', login)
 
 	def variant_to_login(self, variant):
 		"""linux_32_debug -> search env.LINUX_32 and then env.LINUX"""
diff --git a/extras/run_do_script.py b/extras/run_do_script.py
index f3c58122..07e3aa25 100644
--- a/extras/run_do_script.py
+++ b/extras/run_do_script.py
@@ -101,7 +101,7 @@ class run_do_script(run_do_script_base):
 		with open(**kwargs) as log:
 			log_tail = log.readlines()[-10:]
 			for line in log_tail:
-				error_found = re.match("r\(([0-9]+)\)", line)
+				error_found = re.match(r"r\(([0-9]+)\)", line)
 				if error_found:
 					return error_found.group(1), ''.join(log_tail)
 				else:
diff --git a/extras/swig.py b/extras/swig.py
index fd3d6d2c..740ab46d 100644
--- a/extras/swig.py
+++ b/extras/swig.py
@@ -17,10 +17,10 @@ tasks have to be added dynamically:
 
 SWIG_EXTS = ['.swig', '.i']
 
-re_module = re.compile('%module(?:\s*\(.*\))?\s+(.+)', re.M)
+re_module = re.compile(r'%module(?:\s*\(.*\))?\s+(.+)', re.M)
 
 re_1 = re.compile(r'^%module.*?\s+([\w]+)\s*?$', re.M)
-re_2 = re.compile('[#%]include [<"](.*)[">]', re.M)
+re_2 = re.compile(r'[#%](?:include|import(?:\(module=".*"\))+|python(?:begin|code)) [<"](.*)[">]', re.M)
 
 class swig(Task.Task):
 	color   = 'BLUE'